Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65185.1UPF0135 protein Bsu YqfO. (306 aa)    
Predicted Functional Partners:
hisC
Aspartate aminotransferase / Histidinol-phosphate aminotransferase.
 
  
 0.582
AKB63332.1
dTDP-glucose 4,6-dehydratase.
  
    0.581
AKB65360.1
Putative methyltransferase.
  
    0.581
AKB64846.1
Glycogen debranching enzyme.
 
 
   0.510
AKB65096.1
Glycogen debranching enzyme.
 
 
   0.510
AKB64341.1
Hypothetical protein.
 
 
   0.508
AKB63578.1
Agmatinase; Belongs to the arginase family.
 
   
 0.489
AKB65152.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
   
   0.424
AKB65859.1
Putative glycogen debranching enzyme, archaeal type, TIGR01561.
   
   0.424
AKB65902.1
Histone acetyltransferase, ELP3 family.
       0.423
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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