STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65191.1ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase. (163 aa)    
Predicted Functional Partners:
AKB65190.1
Homoserine dehydrogenase.
       0.934
lig
ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
       0.892
AKB64051.1
Hypothetical protein.
  
     0.725
AKB63250.1
Zn-ribbon containing protein.
  
     0.716
AKB65530.1
Hypothetical protein.
  
     0.708
AKB66458.1
Archaeosortase A.
  
     0.706
AKB65728.1
Hypothetical protein.
  
     0.701
AKB64207.1
MarR family protein.
  
     0.684
AKB65706.1
KEOPS complex Cgi121-like subunit.
  
     0.677
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.671
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.