AKB65199.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65199.1

Type I restriction-modification system, DNA-methyltransferase subunit M. (474 aa)

Predicted Functional Partners:

AKB65200.1

0.975

AKB65198.1

0.966

AKB66199.1

0.909

AKB66205.1

0.858

AKB64737.1

0.765

AKB65693.1

0.765

AKB64738.1

0.706

AKB63749.1

0.705

AKB64900.1

0.694

AKB63746.1

0.667

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63746.1	AKB63749.1	MSMAS_0550	MSMAS_0553	Type I restriction-modification system, specificity subunit S.	EcoKI restriction-modification system protein HsdS.	0.623
AKB63746.1	AKB65199.1	MSMAS_0550	MSMAS_2003	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.667
AKB63749.1	AKB63746.1	MSMAS_0553	MSMAS_0550	EcoKI restriction-modification system protein HsdS.	Type I restriction-modification system, specificity subunit S.	0.623
AKB63749.1	AKB64738.1	MSMAS_0553	MSMAS_1542	EcoKI restriction-modification system protein HsdS.	Type I restriction-modification system, restriction subunit R.	0.481
AKB63749.1	AKB65198.1	MSMAS_0553	MSMAS_2002	EcoKI restriction-modification system protein HsdS.	Type I restriction-modification system, restriction subunit R.	0.464
AKB63749.1	AKB65199.1	MSMAS_0553	MSMAS_2003	EcoKI restriction-modification system protein HsdS.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.705
AKB64737.1	AKB64738.1	MSMAS_1541	MSMAS_1542	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.948
AKB64737.1	AKB65198.1	MSMAS_1541	MSMAS_2002	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.607
AKB64737.1	AKB65199.1	MSMAS_1541	MSMAS_2003	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.765
AKB64737.1	AKB65200.1	MSMAS_1541	MSMAS_2004	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, specificity subunit S.	0.432
AKB64737.1	AKB65693.1	MSMAS_1541	MSMAS_2497	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, specificity subunit S.	0.497
AKB64738.1	AKB63749.1	MSMAS_1542	MSMAS_0553	Type I restriction-modification system, restriction subunit R.	EcoKI restriction-modification system protein HsdS.	0.481
AKB64738.1	AKB64737.1	MSMAS_1542	MSMAS_1541	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.948
AKB64738.1	AKB64900.1	MSMAS_1542	MSMAS_1704	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.406
AKB64738.1	AKB65199.1	MSMAS_1542	MSMAS_2003	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.706
AKB64738.1	AKB65200.1	MSMAS_1542	MSMAS_2004	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.598
AKB64738.1	AKB65693.1	MSMAS_1542	MSMAS_2497	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.422
AKB64738.1	AKB66199.1	MSMAS_1542	MSMAS_3003	Type I restriction-modification system, restriction subunit R.	Type I restriction-modification system, specificity subunit S.	0.603
AKB64900.1	AKB64738.1	MSMAS_1704	MSMAS_1542	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, restriction subunit R.	0.406
AKB64900.1	AKB65199.1	MSMAS_1704	MSMAS_2003	Type I restriction-modification system, specificity subunit S.	Type I restriction-modification system, DNA-methyltransferase subunit M.	0.694