STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65210.1Phytoene dehydrogenase. (448 aa)    
Predicted Functional Partners:
AKB64033.1
S-layer family duplication domain protein.
  
     0.682
AKB66376.1
Acetyltransferase (GNAT) family protein.
  
     0.617
AKB65144.1
Putative phosphoglycerate mutase.
 
     0.606
AKB64758.1
Hypothetical protein.
 
     0.602
AKB64783.1
Hypothetical protein.
 
     0.564
AKB63389.1
Thymidylate synthase.
  
     0.550
AKB64259.1
Thymidylate synthase.
  
     0.533
AKB64227.1
Hypothetical protein.
  
     0.517
AKB63319.1
CAAX amino terminal protease family protein.
 
     0.480
AKB65631.1
Hypothetical protein.
 
     0.475
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.