STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65235.1ABC transporter, permease protein. (401 aa)    
Predicted Functional Partners:
AKB65234.1
ABC transporter, ATP-binding protein.
 
 0.954
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
 
    0.823
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
  
 0.791
AKB63547.1
ABC transporter, ATP-binding protein.
  
 0.775
AKB63550.1
ABC transporter, ATP-binding protein.
  
 0.775
AKB64784.1
ABC transporter, ATP-binding protein.
  
 0.775
AKB64856.1
ABC transporter, ATP-binding protein.
  
 0.775
AKB65018.1
Cell division transporter, ATP-binding protein FtsE; TCDB 3.A.5.1.1.
  
 0.775
AKB66257.1
ABC transporter, ATP-binding protein.
  
 0.775
AKB64761.1
Transcriptional regulator, MarR family.
 
   
 0.557
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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