STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65252.1LL-diaminopimelate aminotransferase, methanococcal. (385 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
 
  
 0.979
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.783
AKB64701.1
Ornithine decarboxylase.
 
 
 0.764
AKB66442.1
Aspartokinase; Belongs to the aspartokinase family.
 
 0.717
AKB65190.1
Homoserine dehydrogenase.
  
 0.642
AKB65912.1
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
 
 0.633
AKB64128.1
Prephenate dehydratase.
 
 
 0.593
AKB63279.1
Carbon-nitrogen hydrolase.
 
 
 0.567
AKB64310.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
 0.550
AKB64212.1
Carbon-nitrogen hydrolase.
 
 
 0.540
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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