AKB65253.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65253.1

Hypothetical protein; Belongs to the UPF0280 family. (256 aa)

Predicted Functional Partners:

AKB64256.1

0.949

AKB64257.1

0.945

AKB64393.1

0.799

AKB66002.1

0.755

AKB63237.1

0.499

AKB63784.1

0.455

AKB63785.1

0.455

AKB65800.1

0.455

AKB66247.1

0.428

AKB65252.1

0.419

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63237.1	AKB64256.1	MSMAS_0041	MSMAS_1060	Prephenate and/or arogenate dehydrogenase (unknown specificity).	Inosine-5'-monophosphate dehydrogenase.	0.401
AKB63237.1	AKB65252.1	MSMAS_0041	MSMAS_2056	Prephenate and/or arogenate dehydrogenase (unknown specificity).	LL-diaminopimelate aminotransferase, methanococcal.	0.409
AKB63237.1	AKB65253.1	MSMAS_0041	MSMAS_2057	Prephenate and/or arogenate dehydrogenase (unknown specificity).	Hypothetical protein; Belongs to the UPF0280 family.	0.499
AKB63237.1	AKB66247.1	MSMAS_0041	MSMAS_3051	Prephenate and/or arogenate dehydrogenase (unknown specificity).	Aspartate-semialdehyde dehydrogenase.	0.549
AKB63784.1	AKB63785.1	MSMAS_0588	MSMAS_0589	ABC transporter.	Molybdenum transport ATP-binding protein ModC; TCDB 3.A.1.8.1.	0.506
AKB63784.1	AKB65253.1	MSMAS_0588	MSMAS_2057	ABC transporter.	Hypothetical protein; Belongs to the UPF0280 family.	0.455
AKB63784.1	AKB65800.1	MSMAS_0588	MSMAS_2604	ABC transporter.	YbbL ABC transporter ATP-binding protein.	0.731
AKB63785.1	AKB63784.1	MSMAS_0589	MSMAS_0588	Molybdenum transport ATP-binding protein ModC; TCDB 3.A.1.8.1.	ABC transporter.	0.506
AKB63785.1	AKB65253.1	MSMAS_0589	MSMAS_2057	Molybdenum transport ATP-binding protein ModC; TCDB 3.A.1.8.1.	Hypothetical protein; Belongs to the UPF0280 family.	0.455
AKB64256.1	AKB63237.1	MSMAS_1060	MSMAS_0041	Inosine-5'-monophosphate dehydrogenase.	Prephenate and/or arogenate dehydrogenase (unknown specificity).	0.401
AKB64256.1	AKB64257.1	MSMAS_1060	MSMAS_1061	Inosine-5'-monophosphate dehydrogenase.	Ferredoxin.	0.999
AKB64256.1	AKB65253.1	MSMAS_1060	MSMAS_2057	Inosine-5'-monophosphate dehydrogenase.	Hypothetical protein; Belongs to the UPF0280 family.	0.949
AKB64256.1	AKB66002.1	MSMAS_1060	MSMAS_2806	Inosine-5'-monophosphate dehydrogenase.	O-phosphoseryl-tRNA:Cysteinyl-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.	0.793
AKB64256.1	AKB66247.1	MSMAS_1060	MSMAS_3051	Inosine-5'-monophosphate dehydrogenase.	Aspartate-semialdehyde dehydrogenase.	0.983
AKB64257.1	AKB64256.1	MSMAS_1061	MSMAS_1060	Ferredoxin.	Inosine-5'-monophosphate dehydrogenase.	0.999
AKB64257.1	AKB64393.1	MSMAS_1061	MSMAS_1197	Ferredoxin.	Ferredoxin oxidoreductase.	0.821
AKB64257.1	AKB65253.1	MSMAS_1061	MSMAS_2057	Ferredoxin.	Hypothetical protein; Belongs to the UPF0280 family.	0.945
AKB64257.1	AKB66002.1	MSMAS_1061	MSMAS_2806	Ferredoxin.	O-phosphoseryl-tRNA:Cysteinyl-tRNA synthase; Converts O-phospho-L-seryl-tRNA(Cys) (Sep-tRNA(Cys)) to L- cysteinyl-tRNA(Cys) (Cys-tRNA(Cys)); Belongs to the SepCysS family.	0.780
AKB64257.1	AKB66247.1	MSMAS_1061	MSMAS_3051	Ferredoxin.	Aspartate-semialdehyde dehydrogenase.	0.937
AKB64393.1	AKB64257.1	MSMAS_1197	MSMAS_1061	Ferredoxin oxidoreductase.	Ferredoxin.	0.821