STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65259.1Hypothetical protein. (250 aa)    
Predicted Functional Partners:
AKB65258.1
Small-conductance mechanosensitive channel.
 
     0.951
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.620
AKB66190.1
Signal peptidase, type IV - prepilin/preflagellin.
  
     0.588
AKB64428.1
Hypothetical protein.
 
     0.573
AKB65273.1
Cell surface protein.
  
     0.573
AKB65935.1
Digeranylgeranylglyceryl phosphate synthase.
  
     0.560
AKB65600.1
Cell surface protein.
  
     0.550
AKB64987.1
Cell surface protein.
  
     0.549
thrS
Threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
     0.542
AKB64217.1
Membrane alanine aminopeptidase N.
  
     0.540
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.