AKB65281.1 protein (Methanosarcina mazei) - STRING interaction network

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[Homology]

Score

AKB65281.1

Ribonuclease PH. (465 aa)

Predicted Functional Partners:

rrp42

0.999

rrp4

0.999

csl4

0.996

AKB63960.1

0.975

dnaG

0.967

rps4

0.950

rpl7ae

0.940

rpl37ae

0.933

rps11

0.933

rps6e

0.929

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63960.1	AKB65281.1	MSMAS_0764	MSMAS_2085	3'-to-5' exoribonuclease RNase R.	Ribonuclease PH.	0.975
AKB63960.1	csl4	MSMAS_0764	MSMAS_2808	3'-to-5' exoribonuclease RNase R.	Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.969
AKB63960.1	rpl37ae	MSMAS_0764	MSMAS_2083	3'-to-5' exoribonuclease RNase R.	LSU ribosomal protein L37Ae; Binds to the 23S rRNA.	0.563
AKB63960.1	rpl7ae	MSMAS_0764	MSMAS_2234	3'-to-5' exoribonuclease RNase R.	LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.774
AKB63960.1	rps11	MSMAS_0764	MSMAS_2527	3'-to-5' exoribonuclease RNase R.	SSU ribosomal protein S14e (S11p); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.	0.845
AKB63960.1	rps4	MSMAS_0764	MSMAS_2528	3'-to-5' exoribonuclease RNase R.	SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.838
AKB63960.1	rps6e	MSMAS_0764	MSMAS_2239	3'-to-5' exoribonuclease RNase R.	SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.728
AKB63960.1	rrp4	MSMAS_0764	MSMAS_2086	3'-to-5' exoribonuclease RNase R.	Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.	0.965
AKB63960.1	rrp42	MSMAS_0764	MSMAS_2084	3'-to-5' exoribonuclease RNase R.	Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.	0.968
AKB65281.1	AKB63960.1	MSMAS_2085	MSMAS_0764	Ribonuclease PH.	3'-to-5' exoribonuclease RNase R.	0.975
AKB65281.1	csl4	MSMAS_2085	MSMAS_2808	Ribonuclease PH.	Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	0.996
AKB65281.1	dnaG	MSMAS_2085	MSMAS_0020	Ribonuclease PH.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.	0.967
AKB65281.1	rpl37ae	MSMAS_2085	MSMAS_2083	Ribonuclease PH.	LSU ribosomal protein L37Ae; Binds to the 23S rRNA.	0.933
AKB65281.1	rpl7ae	MSMAS_2085	MSMAS_2234	Ribonuclease PH.	LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.940
AKB65281.1	rps11	MSMAS_2085	MSMAS_2527	Ribonuclease PH.	SSU ribosomal protein S14e (S11p); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.	0.933
AKB65281.1	rps4	MSMAS_2085	MSMAS_2528	Ribonuclease PH.	SSU ribosomal protein S9e (S4p); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.950
AKB65281.1	rps6e	MSMAS_2085	MSMAS_2239	Ribonuclease PH.	SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.929
AKB65281.1	rrp4	MSMAS_2085	MSMAS_2086	Ribonuclease PH.	Putative exosome complex RNA-binding protein 1; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome.	0.999
AKB65281.1	rrp42	MSMAS_2085	MSMAS_2084	Ribonuclease PH.	Putative exosome complex exonuclease 2; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.	0.999
csl4	AKB63960.1	MSMAS_2808	MSMAS_0764	Exosome complex RNA-binding protein Csl4; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs.	3'-to-5' exoribonuclease RNase R.	0.969