Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65324.1Ferrous iron transport protein A. (82 aa)    
Predicted Functional Partners:
AKB65326.1
Ferrous iron transport protein B.
 
  
 0.995
AKB65325.1
Ferrous iron transport protein A.
 
   
 0.930
AKB65327.1
Hypothetical protein.
       0.920
AKB63462.1
Ferrous iron transport protein B.
 
  
 0.917
AKB65328.1
Hypothetical protein.
       0.808
AKB64187.1
Radical SAM domain protein.
  
  
 0.476
AKB64389.1
Cytochrome c-type biogenesis protein, archaeal, distantly related to heme lyase subunit CcmF.
     
 0.474
AKB65323.1
Pyruvate formate lyase-activating enzyme 1.
       0.429
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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