STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65329.1Iron-dependent repressor IdeR/DtxR. (161 aa)    
Predicted Functional Partners:
AKB66524.1
Zinc ABC transporter, ATP-binding protein ZnuC.
  
 
 0.654
AKB66525.1
Zinc ABC transporter, periplasmic-binding protein ZnuA.
  
 
 0.639
AKB66523.1
Zinc ABC transporter, inner membrane permease protein ZnuB.
  
 
 0.602
AKB63431.1
Hydrogenase, group 4, HycG subunit, putative.
    
   0.589
AKB65575.1
Energy-conserving hydrogenase (ferredoxin), subunit C.
    
   0.589
thyA
Thymidylate synthase; May catalyze the biosynthesis of dTMP using an unknown cosubstrate; Belongs to the thymidylate synthase family. Archaeal-type ThyA subfamily.
    
 0.497
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.