STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65335.1ABC transporter, solute-binding protein. (524 aa)    
Predicted Functional Partners:
AKB65332.1
ABC transporter, ATP-binding protein.
 
 0.975
AKB65334.1
Dipeptide transport system permease protein DppB; TCDB 3.A.1.5.2.
 0.951
AKB65333.1
Dipeptide transport system permease protein DppC; TCDB 3.A.1.5.2.
 0.936
AKB64558.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 0.926
AKB64559.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 0.873
AKB65331.1
Dipeptide transport ATP-binding protein DppF; TCDB 3.A.1.5.2.
 
 0.858
AKB65438.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 0.858
AKB66022.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 0.849
AKB66023.1
Oligopeptide transport system permease protein OppC; TCDB 3.A.1.5.1.
 0.847
AKB64555.1
Oligopeptide transport system permease protein OppB; TCDB 3.A.1.5.1.
 
 
 0.843
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.