AKB65337.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65337.1

Molybdenum cofactor biosynthesis protein A. (340 aa)

Predicted Functional Partners:

AKB64888.1

0.831

AKB66113.1

0.827

AKB64017.1

0.788

AKB63568.1

0.751

AKB65153.1

0.685

AKB65338.1

0.505

moaA

0.486

AKB63750.1

0.471

AKB64545.1

0.435

AKB63664.1

0.424

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63568.1	AKB64888.1	MSMAS_0372	MSMAS_1692	Lysine 2,3-aminomutase.	Anaerobic ribonucleoside-triphosphate reductase activating protein.	0.751
AKB63568.1	AKB65337.1	MSMAS_0372	MSMAS_2141	Lysine 2,3-aminomutase.	Molybdenum cofactor biosynthesis protein A.	0.751
AKB63664.1	AKB65153.1	MSMAS_0468	MSMAS_1957	Aldehyde dehydrogenase.	Alcohol dehydrogenase.	0.793
AKB63664.1	AKB65337.1	MSMAS_0468	MSMAS_2141	Aldehyde dehydrogenase.	Molybdenum cofactor biosynthesis protein A.	0.424
AKB63750.1	AKB65337.1	MSMAS_0554	MSMAS_2141	Hypothetical protein.	Molybdenum cofactor biosynthesis protein A.	0.471
AKB64017.1	AKB65337.1	MSMAS_0821	MSMAS_2141	Hypothetical protein.	Molybdenum cofactor biosynthesis protein A.	0.788
AKB64017.1	AKB66113.1	MSMAS_0821	MSMAS_2917	Hypothetical protein.	Hypothetical protein; COG1355, Predicted dioxygenase; Belongs to the MEMO1 family.	0.990
AKB64545.1	AKB65337.1	MSMAS_1349	MSMAS_2141	Hypothetical protein.	Molybdenum cofactor biosynthesis protein A.	0.435
AKB64888.1	AKB63568.1	MSMAS_1692	MSMAS_0372	Anaerobic ribonucleoside-triphosphate reductase activating protein.	Lysine 2,3-aminomutase.	0.751
AKB64888.1	AKB65337.1	MSMAS_1692	MSMAS_2141	Anaerobic ribonucleoside-triphosphate reductase activating protein.	Molybdenum cofactor biosynthesis protein A.	0.831
AKB65153.1	AKB63664.1	MSMAS_1957	MSMAS_0468	Alcohol dehydrogenase.	Aldehyde dehydrogenase.	0.793
AKB65153.1	AKB65337.1	MSMAS_1957	MSMAS_2141	Alcohol dehydrogenase.	Molybdenum cofactor biosynthesis protein A.	0.685
AKB65337.1	AKB63568.1	MSMAS_2141	MSMAS_0372	Molybdenum cofactor biosynthesis protein A.	Lysine 2,3-aminomutase.	0.751
AKB65337.1	AKB63664.1	MSMAS_2141	MSMAS_0468	Molybdenum cofactor biosynthesis protein A.	Aldehyde dehydrogenase.	0.424
AKB65337.1	AKB63750.1	MSMAS_2141	MSMAS_0554	Molybdenum cofactor biosynthesis protein A.	Hypothetical protein.	0.471
AKB65337.1	AKB64017.1	MSMAS_2141	MSMAS_0821	Molybdenum cofactor biosynthesis protein A.	Hypothetical protein.	0.788
AKB65337.1	AKB64545.1	MSMAS_2141	MSMAS_1349	Molybdenum cofactor biosynthesis protein A.	Hypothetical protein.	0.435
AKB65337.1	AKB64888.1	MSMAS_2141	MSMAS_1692	Molybdenum cofactor biosynthesis protein A.	Anaerobic ribonucleoside-triphosphate reductase activating protein.	0.831
AKB65337.1	AKB65153.1	MSMAS_2141	MSMAS_1957	Molybdenum cofactor biosynthesis protein A.	Alcohol dehydrogenase.	0.685
AKB65337.1	AKB65338.1	MSMAS_2141	MSMAS_2142	Molybdenum cofactor biosynthesis protein A.	Hypothetical protein.	0.505