Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB65347.1Aromatic hydrocarbon catabolism protein. (343 aa)    
Predicted Functional Partners:
AKB65348.1
Mobile element protein.
       0.740
AKB65349.1
Mobile element protein.
       0.740
AKB63764.1
Hypothetical protein.
   
 0.600
AKB64424.1
Serine/threonine protein phosphatase BSU1.
   
 0.600
AKB66208.1
2',3'-cyclic nucleotide 3'-phosphodiesterase.
   
 0.600
AKB64479.1
Putative ankyrin repeat protein.
  
 0.549
AKB65098.1
5,10-methylenetetrahydromethanopterin reductase.
 
 
 0.546
AKB65687.1
5,10-methylenetetrahydromethanopterin reductase.
 
 
 0.534
AKB65973.1
Isochorismatase.
 
 0.531
mer
5,10-methylenetetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family.
 
 
 0.517
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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