Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65354.1Pentapeptide repeat family protein. (583 aa)    
Predicted Functional Partners:
AKB64636.1
Hypothetical protein.
 
  
 0.589
AKB65353.1
Hypothetical protein.
       0.545
AKB65034.1
Tetratricopeptide repeat family protein.
  
     0.515
AKB64754.1
Hypothetical protein.
 
   
 0.469
AKB64721.1
Hypothetical protein.
 
   
 0.467
AKB64733.1
Hypothetical protein.
 
  
 0.462
AKB65475.1
Chaperone protein.
 
 
   0.442
AKB65340.1
Hypothetical protein.
 
  
 0.431
AKB64427.1
Vi polysaccharide export protein VexE.
 
  
 0.420
AKB64369.1
Hypothetical protein.
 
  
 0.416
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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