STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65371.1Copper binding protein, plastocyanin/azurin family. (200 aa)    
Predicted Functional Partners:
AKB65552.1
Copper binding protein, plastocyanin/azurin family.
  
     0.730
AKB64450.1
Copper binding protein, plastocyanin/azurin family.
  
     0.724
trm1
tRNA N2,N2-dimethyl(Guanine26-N2)-methyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
       0.670
AKB64967.1
Hypothetical protein.
  
     0.487
AKB65373.1
Hypothetical protein.
       0.459
AKB63548.1
Hypothetical protein.
  
     0.424
AKB65459.1
Hypothetical protein.
  
     0.419
AKB65370.1
Mobile element protein.
       0.415
AKB66078.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.