ef1b protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ef1b

Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA. (89 aa)

Predicted Functional Partners:

rpl2

0.993

tuf

0.992

AKB65386.1

0.978

rpl29

0.965

rpl31e

0.959

rps3

0.958

rps19e

0.948

rps24e

0.947

rpl30

0.940

rps27e

0.940

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB65386.1	ef1b	MSMAS_2190	MSMAS_2189	Putative Zn-ribbon RNA-binding protein with a function in translation.	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	0.978
AKB65386.1	rpl2	MSMAS_2190	MSMAS_2557	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.980
AKB65386.1	rpl29	MSMAS_2190	MSMAS_2553	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family.	0.974
AKB65386.1	rpl30	MSMAS_2190	MSMAS_2539	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L7e (L30p).	0.897
AKB65386.1	rpl31e	MSMAS_2190	MSMAS_0499	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.910
AKB65386.1	rps19e	MSMAS_2190	MSMAS_0503	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.962
AKB65386.1	rps24e	MSMAS_2190	MSMAS_0710	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.	0.929
AKB65386.1	rps27e	MSMAS_2190	MSMAS_2875	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S27e.	0.964
AKB65386.1	rps3	MSMAS_2190	MSMAS_2554	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.980
ef1b	AKB65386.1	MSMAS_2189	MSMAS_2190	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Putative Zn-ribbon RNA-binding protein with a function in translation.	0.978
ef1b	rpl2	MSMAS_2189	MSMAS_2557	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.993
ef1b	rpl29	MSMAS_2189	MSMAS_2553	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family.	0.965
ef1b	rpl30	MSMAS_2189	MSMAS_2539	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L7e (L30p).	0.940
ef1b	rpl31e	MSMAS_2189	MSMAS_0499	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.959
ef1b	rps19e	MSMAS_2189	MSMAS_0503	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.	0.948
ef1b	rps24e	MSMAS_2189	MSMAS_0710	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.	0.947
ef1b	rps27e	MSMAS_2189	MSMAS_2875	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S27e.	0.940
ef1b	rps3	MSMAS_2189	MSMAS_2554	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.958
ef1b	tuf	MSMAS_2189	MSMAS_2431	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Translation elongation factor 1 alpha subunit; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.992
rpl2	AKB65386.1	MSMAS_2557	MSMAS_2190	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Putative Zn-ribbon RNA-binding protein with a function in translation.	0.980

page 1 of 6

Server load: low (36%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About