AKB65386.1 protein (Methanosarcina mazei) - STRING interaction network

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Score

AKB65386.1

Putative Zn-ribbon RNA-binding protein with a function in translation. (56 aa)

Predicted Functional Partners:

rpl40e

0.985

rpl39e

0.980

rps3

0.980

rpl2

0.980

rps17e

0.979

ef1b

0.978

rpl29

0.974

rpl22

0.974

rps27ae

0.972

rpl15e

0.968

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB65386.1	ef1b	MSMAS_2190	MSMAS_2189	Putative Zn-ribbon RNA-binding protein with a function in translation.	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	0.978
AKB65386.1	rpl15e	MSMAS_2190	MSMAS_2092	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	0.968
AKB65386.1	rpl2	MSMAS_2190	MSMAS_2557	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.980
AKB65386.1	rpl22	MSMAS_2190	MSMAS_2555	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L17e (L22p); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.974
AKB65386.1	rpl29	MSMAS_2190	MSMAS_2553	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family.	0.974
AKB65386.1	rpl39e	MSMAS_2190	MSMAS_0500	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.	0.980
AKB65386.1	rpl40e	MSMAS_2190	MSMAS_0362	Putative Zn-ribbon RNA-binding protein with a function in translation.	LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.985
AKB65386.1	rps17e	MSMAS_2190	MSMAS_0112	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.979
AKB65386.1	rps27ae	MSMAS_2190	MSMAS_0709	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S27Ae; Belongs to the eukaryotic ribosomal protein eS31 family.	0.972
AKB65386.1	rps3	MSMAS_2190	MSMAS_2554	Putative Zn-ribbon RNA-binding protein with a function in translation.	SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.980
ef1b	AKB65386.1	MSMAS_2189	MSMAS_2190	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	Putative Zn-ribbon RNA-binding protein with a function in translation.	0.978
ef1b	rpl15e	MSMAS_2189	MSMAS_2092	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	0.930
ef1b	rpl2	MSMAS_2189	MSMAS_2557	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.993
ef1b	rpl22	MSMAS_2189	MSMAS_2555	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L17e (L22p); The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.932
ef1b	rpl29	MSMAS_2189	MSMAS_2553	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L35e (L29p); Belongs to the universal ribosomal protein uL29 family.	0.965
ef1b	rpl39e	MSMAS_2189	MSMAS_0500	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L39e; Belongs to the eukaryotic ribosomal protein eL39 family.	0.906
ef1b	rpl40e	MSMAS_2189	MSMAS_0362	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.895
ef1b	rps17e	MSMAS_2189	MSMAS_0112	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.	0.888
ef1b	rps27ae	MSMAS_2189	MSMAS_0709	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S27Ae; Belongs to the eukaryotic ribosomal protein eS31 family.	0.856
ef1b	rps3	MSMAS_2189	MSMAS_2554	Translation elongation factor 1 beta subunit; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.	SSU ribosomal protein S3e (S3p); Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.	0.958