STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65442.1ABC transporter, permease protein. (254 aa)    
Predicted Functional Partners:
AKB65441.1
ABC transporter, ATP-binding protein.
 
 
 0.969
AKB64744.1
ABC transporter, ATP-binding protein.
 
 
 0.878
AKB63545.1
ABC transporter, ATP-binding protein.
 
 
 0.866
AKB64657.1
ABC transporter, ATP-binding protein.
 
 
 0.861
AKB65882.1
ABC transporter, ATP-binding protein.
 
 
 0.851
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
 
 
 0.667
AKB65058.1
ABC transporter, ATP-binding protein.
 
 
 0.645
AKB65450.1
ABC transporter, ATP-binding protein.
 
 
 0.622
AKB65436.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
    
 0.614
AKB63438.1
ABC transporter, ATP-binding protein.
 
 
 0.591
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.