Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65442.1ABC transporter, permease protein. (254 aa)    
Predicted Functional Partners:
AKB65441.1
ABC transporter, ATP-binding protein.
 
 
 0.968
AKB64744.1
ABC transporter, ATP-binding protein.
 
 
 0.896
AKB63545.1
ABC transporter, ATP-binding protein.
 
 
 0.866
AKB64657.1
ABC transporter, ATP-binding protein.
 
 
 0.860
AKB65882.1
ABC transporter, ATP-binding protein.
 
 
 0.849
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
 
 
 0.662
AKB65058.1
ABC transporter, ATP-binding protein.
 
 
 0.640
AKB65450.1
ABC transporter, ATP-binding protein.
 
 
 0.617
AKB65436.1
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA; TCDB 3.A.1.5.1.
    
 0.612
AKB63438.1
ABC transporter, ATP-binding protein.
 
 
 0.586
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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