STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65459.1Hypothetical protein. (254 aa)    
Predicted Functional Partners:
AKB65460.1
Hypothetical protein.
       0.787
AKB66370.1
Putative transcriptional regulators.
  
   
 0.644
AKB66292.1
Hypothetical protein.
  
     0.615
AKB63374.1
Hypothetical protein.
  
     0.549
AKB66163.1
Hypothetical protein.
  
     0.543
AKB66190.1
Signal peptidase, type IV - prepilin/preflagellin.
  
     0.532
AKB63354.1
Hypothetical protein.
  
     0.527
AKB65521.1
Hypothetical protein.
  
     0.524
AKB64783.1
Hypothetical protein.
  
     0.509
AKB65236.1
Putative carboxyl-terminal-processing protease, deltaproteobacterial.
  
     0.501
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.