STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65497.1ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA. (237 aa)    
Predicted Functional Partners:
AKB65498.1
ABC transporter involved in cytochrome c biogenesis, CcmB subunit.
  
  0.999
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
 
  
 0.962
AKB63708.1
Hypothetical protein.
  
   
 0.807
AKB64388.1
Putative cytochrome c biogenesis factor, archaeal.
      
 0.751
AKB65451.1
Hypothetical protein.
  
 0.734
AKB64743.1
Multidrug ABC transporter, permease protein.
 
 
 0.671
AKB65332.1
ABC transporter, ATP-binding protein.
    
 0.669
AKB65442.1
ABC transporter, permease protein.
 
 
 0.662
AKB65883.1
ABC transporter, permease protein.
 
 
 0.642
AKB63546.1
ABC transporter, permease protein.
 
 
 0.631
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.