STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65500.12,4-dienoyl-CoA reductase [NADPH]. (355 aa)    
Predicted Functional Partners:
AKB64705.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
  
 
 0.752
AKB64655.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.710
AKB64310.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.704
AKB64333.1
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Includes in-frame UAG codon.
  
 
 0.664
AKB64217.1
Membrane alanine aminopeptidase N.
 
 
 0.630
AKB65503.1
Long-chain-fatty-acid--CoA ligase.
 
 
 0.619
AKB65502.1
Hypothetical protein.
 
  
 0.572
AKB63891.1
Long-chain-fatty-acid--CoA ligase.
 
 
 0.532
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
     
 0.529
AKB64572.1
Ferredoxin.
 
 
 0.528
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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