Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB65508.1Substrate-specific component TrpP of tryptophan ECF transporter. (174 aa)    
Predicted Functional Partners:
AKB65506.1
Transmembrane component of energizing module of predicted tryptophan ECF transporter.
 
 0.976
AKB65507.1
Duplicated ATPase component of energizing module of predicted tryptophan ECF transporter.
     0.862
AKB65881.1
Transmembrane component of general energizing module of ECF transporters.
 
 0.803
AKB63456.1
Transmembrane component BioN of energizing module of biotin ECF transporter.
 
 0.773
AKB64860.1
Transmembrane component of general energizing module of ECF transporters.
 
 0.769
AKB63614.1
Transmembrane component NikQ of energizing module of nickel ECF transporter.
  
 0.704
AKB64037.1
Transmembrane component CbiQ of energizing module of cobalt ECF transporter.
  
 0.704
AKB63675.1
Hypothetical protein.
 
     0.644
AKB63459.1
Substrate-specific component BioY of biotin ECF transporter.
   
 
 0.617
AKB66277.1
Cell surface protein.
 
    0.502
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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