Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65521.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
leuC-2
3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.777
AKB63917.1
Hypothetical protein.
  
     0.745
AKB65520.1
Hypothetical protein.
 
     0.688
AKB66163.1
Hypothetical protein.
  
     0.679
AKB65680.1
Kef-type K+ transport systems (NAD-binding component fused to domain related to exopolyphosphatase).
 
    0.670
AKB64203.1
Replication protein A (two OB fold, one zinc finger).
 
     0.663
AKB65510.1
Hypothetical protein.
 
     0.647
AKB65679.1
Hypothetical protein.
  
     0.647
AKB65144.1
Putative phosphoglycerate mutase.
 
     0.646
AKB63252.1
Archaeal heat shock regulator, ArsR family.
  
     0.642
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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