Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65530.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
AKB65531.1
GTPase Era.
 
   
 0.989
AKB65529.1
Hypothetical protein.
       0.942
AKB63250.1
Zn-ribbon containing protein.
 
   
 0.896
AKB65528.1
6-phospho-3-hexuloisomerase.
       0.857
AKB65527.1
Biosynthetic Aromatic amino acid aminotransferase alpha / Aspartate aminotransferase.
       0.839
AKB65191.1
ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase.
  
     0.708
AKB64051.1
Hypothetical protein.
 
     0.703
AKB65913.1
Hypothetical protein.
 
     0.695
AKB66452.1
Hypothetical protein.
  
     0.687
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.684
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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