Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKB65575.1Energy-conserving hydrogenase (ferredoxin), subunit C. (106 aa)    
Predicted Functional Partners:
AKB63432.1
Hydrogenase, group 4, HycE subunit, putative.
 
 0.998
AKB65573.1
Energy-conserving hydrogenase (ferredoxin), subunit E.
 
 0.997
AKB65576.1
Energy-conserving hydrogenase (ferredoxin), subunit B.
 
 0.992
AKB65572.1
Energy-conserving hydrogenase (ferredoxin), subunit F.
 
 0.989
AKB65412.1
Hypothetical protein.
 
 0.954
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
 
 
 0.950
AKB63435.1
Formate hydrogenlyase subunit 4.
 
 0.936
AKB65574.1
Energy-conserving hydrogenase (ferredoxin), subunit D.
 
     0.933
AKB63436.1
Hydrogenase, HycC subunit, putative.
 
 0.930
AKB63433.1
Hydrogenase-4 component F.
 
 0.929
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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