STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65579.1[NiFe] hydrogenase nickel incorporation-associated protein HypB. (219 aa)    
Predicted Functional Partners:
hypA
[NiFe] hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 0.985
AKB65581.1
[NiFe] hydrogenase metallocenter assembly protein HypD.
 
  
 0.965
AKB65578.1
[NiFe] hydrogenase metallocenter assembly protein HypE.
 
  
 0.900
AKB65582.1
[NiFe] hydrogenase metallocenter assembly protein HypC.
 
  
 0.870
AKB63721.1
[NiFe] hydrogenase metallocenter assembly protein HypF.
 
   
 0.763
AKB63432.1
Hydrogenase, group 4, HycE subunit, putative.
   
 
 0.761
AKB65717.1
[NiFe] hydrogenase metallocenter assembly protein HypC.
 
  
 0.669
AKB64841.1
Coenzyme F420 hydrogenase subunit alpha.
 
  
 0.655
AKB65246.1
Peptidyl-prolyl cis-trans isomerase.
    
 0.617
AKB65716.1
Methanophenazine hydrogenase small subunit precursor.
 
  
 0.580
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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