STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65593.1Transcriptional regulator. (418 aa)    
Predicted Functional Partners:
AKB65594.1
Transcriptional regulator.
 
  
 
0.945
AKB63225.1
Metallo-beta-lactamase.
    
 0.905
AKB64977.1
Metallo-beta-lactamase family protein.
     
  0.900
AKB66343.1
ATP-utilizing enzyme of the PP-loop superfamily.
 
  
 0.812
AKB66249.1
Circadian phase modifier.
 
  
 0.807
AKB66248.1
Hypothetical protein; Belongs to the LarC family.
 
  
 0.695
AKB66252.1
Hypothetical protein.
 
  
 0.606
AKB63607.1
Substrate-specific component NikM of nickel ECF transporter.
 
    0.470
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.