STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65635.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
  
 0.935
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
  
 0.935
AKB65876.1
PQQ enzyme repeat domain protein.
 
 0.674
rps5
SSU ribosomal protein S2e (S5p); With S4 and S12 plays an important role in translational accuracy.
    
 0.602
AKB65428.1
WD-domain containing protein.
 
 0.581
AKB65408.1
Putative membrane-bound hydrogenase subunit mbhJ; Belongs to the complex I 20 kDa subunit family.
   
 0.572
AKB64637.1
Hypothetical protein.
  
     0.563
rad50
DNA double-strand break repair Rad50 ATPase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex; Belongs to the SMC family. RAD50 subfamily.
 
  
 0.556
AKB66220.1
Hypothetical protein.
 
     0.553
AKB64414.1
Hypothetical protein.
  
     0.550
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.