Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB65651.1Cytochrome C-type biogenesis protein (ccdA), conjectural. (214 aa)    
Predicted Functional Partners:
AKB65652.1
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis.
 
  
 0.886
AKB64438.1
Integral membrane protein.
  
  
 0.597
AKB65455.1
Hypothetical protein; Similar to cytochrome C-type biogenesis protein CcdA.
  
     0.587
AKB66250.1
Aldo/keto reductase.
   
    0.587
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
  
  
 0.565
AKB65650.1
Transcriptional regulator, ArsR family.
 
   
 0.563
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
     
 0.538
AKB63708.1
Hypothetical protein.
      
 0.527
AKB64388.1
Putative cytochrome c biogenesis factor, archaeal.
      
 0.527
AKB66266.1
Metal transporter, ZIP family.
  
    0.509
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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