STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65651.1Cytochrome C-type biogenesis protein (ccdA), conjectural. (214 aa)    
Predicted Functional Partners:
AKB65652.1
Putative thiol:disulfide oxidoreductase involved in cytochrome C-type biogenesis.
 
  
 0.871
AKB65455.1
Hypothetical protein; Similar to cytochrome C-type biogenesis protein CcdA.
  
     0.587
AKB65650.1
Transcriptional regulator, ArsR family.
 
   
 0.565
AKB64438.1
Integral membrane protein.
  
    0.535
AKB66250.1
Aldo/keto reductase.
   
    0.529
AKB66266.1
Metal transporter, ZIP family.
  
    0.520
AKB63569.1
Kef-type transport system 2 (probable substrate potassium), subunit 2.
  
    0.492
AKB63573.1
Kef-type transport system 2 (probable substrate potassium), subunit 1.
  
    0.492
AKB65971.1
Glutathione-regulated potassium-efflux system protein KefC.
  
    0.492
AKB65499.1
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE.
  
  
 0.481
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.