STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65659.1DNA polymerase, beta-like region. (313 aa)    
Predicted Functional Partners:
AKB65389.1
COG1821 family protein.
 
     0.705
mfnB
Duf556 family protein; Catalyzes the formation of 4-(hydroxymethyl)-2- furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P).
  
     0.644
AKB63812.1
Dihydropteroate synthase-related protein.
 
     0.626
AKB64464.1
Formylmethanofuran dehydrogenase subunit D.
 
     0.623
AKB65387.1
Delta 1-pyrroline-5-carboxylate synthetase.
  
     0.593
AKB65895.1
Formylmethanofuran dehydrogenase (tungsten) subunit D.
 
     0.592
AKB66027.1
DUF447 family protein.
  
     0.590
AKB65388.1
Putative H4MPT-linked C1 transfer pathway protein.
  
     0.583
AKB66028.1
Triphosphoribosyl-dephospho-CoA synthetase.
 
     0.581
mtd
F420-dependent methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
  
     0.575
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.