STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65672.1O-antigen export system permease protein RfbD. (253 aa)    
Predicted Functional Partners:
AKB65673.1
Teichoic acid export ATP-binding protein TagH.
 
 0.999
AKB65674.1
Hypothetical protein.
 
     0.814
AKB65671.1
Glucose-1-phosphate thymidylyltransferase.
     
 0.772
AKB63323.1
Glycosyltransferase.
 
  
 0.765
AKB63330.1
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.752
AKB65670.1
Hypothetical protein.
 
  
 0.589
AKB65664.1
dolichol-P-glucose synthetase, putative.
 
  
 0.561
AKB65785.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
  
  
 0.546
AKB63854.1
Glycosyltransferase.
 
  
 0.506
AKB63333.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
   
 0.502
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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