AKB65710.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65710.1

Methanophenazine hydrogenase small subunit precursor. (403 aa)

Predicted Functional Partners:

AKB65709.1

0.990

AKB65584.1

0.959

AKB65715.1

0.959

AKB65583.1

0.902

AKB65716.1

0.902

AKB64841.1

0.890

AKB65713.1

0.853

AKB65708.1

0.794

AKB64842.1

0.733

AKB65581.1

0.726

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB64841.1	AKB64842.1	MSMAS_1645	MSMAS_1646	Coenzyme F420 hydrogenase subunit alpha.	Hydrogenase 1 maturation protease.	0.997
AKB64841.1	AKB65581.1	MSMAS_1645	MSMAS_2385	Coenzyme F420 hydrogenase subunit alpha.	[NiFe] hydrogenase metallocenter assembly protein HypD.	0.786
AKB64841.1	AKB65583.1	MSMAS_1645	MSMAS_2387	Coenzyme F420 hydrogenase subunit alpha.	Methanophenazine hydrogenase small subunit precursor.	0.889
AKB64841.1	AKB65710.1	MSMAS_1645	MSMAS_2514	Coenzyme F420 hydrogenase subunit alpha.	Methanophenazine hydrogenase small subunit precursor.	0.890
AKB64841.1	AKB65713.1	MSMAS_1645	MSMAS_2517	Coenzyme F420 hydrogenase subunit alpha.	Methanophenazine hydrogenase maturation protease.	0.885
AKB64841.1	AKB65716.1	MSMAS_1645	MSMAS_2520	Coenzyme F420 hydrogenase subunit alpha.	Methanophenazine hydrogenase small subunit precursor.	0.889
AKB64842.1	AKB64841.1	MSMAS_1646	MSMAS_1645	Hydrogenase 1 maturation protease.	Coenzyme F420 hydrogenase subunit alpha.	0.997
AKB64842.1	AKB65581.1	MSMAS_1646	MSMAS_2385	Hydrogenase 1 maturation protease.	[NiFe] hydrogenase metallocenter assembly protein HypD.	0.555
AKB64842.1	AKB65583.1	MSMAS_1646	MSMAS_2387	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase small subunit precursor.	0.731
AKB64842.1	AKB65584.1	MSMAS_1646	MSMAS_2388	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.768
AKB64842.1	AKB65709.1	MSMAS_1646	MSMAS_2513	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.772
AKB64842.1	AKB65710.1	MSMAS_1646	MSMAS_2514	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase small subunit precursor.	0.733
AKB64842.1	AKB65715.1	MSMAS_1646	MSMAS_2519	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.769
AKB64842.1	AKB65716.1	MSMAS_1646	MSMAS_2520	Hydrogenase 1 maturation protease.	Methanophenazine hydrogenase small subunit precursor.	0.732
AKB65581.1	AKB64841.1	MSMAS_2385	MSMAS_1645	[NiFe] hydrogenase metallocenter assembly protein HypD.	Coenzyme F420 hydrogenase subunit alpha.	0.786
AKB65581.1	AKB64842.1	MSMAS_2385	MSMAS_1646	[NiFe] hydrogenase metallocenter assembly protein HypD.	Hydrogenase 1 maturation protease.	0.555
AKB65581.1	AKB65583.1	MSMAS_2385	MSMAS_2387	[NiFe] hydrogenase metallocenter assembly protein HypD.	Methanophenazine hydrogenase small subunit precursor.	0.722
AKB65581.1	AKB65584.1	MSMAS_2385	MSMAS_2388	[NiFe] hydrogenase metallocenter assembly protein HypD.	Methanophenazine hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.813
AKB65581.1	AKB65709.1	MSMAS_2385	MSMAS_2513	[NiFe] hydrogenase metallocenter assembly protein HypD.	Methanophenazine hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.811
AKB65581.1	AKB65710.1	MSMAS_2385	MSMAS_2514	[NiFe] hydrogenase metallocenter assembly protein HypD.	Methanophenazine hydrogenase small subunit precursor.	0.726