STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65721.1Collagen triple helix repeat domain protein. (486 aa)    
Predicted Functional Partners:
AKB65552.1
Copper binding protein, plastocyanin/azurin family.
 
 
   0.654
AKB64450.1
Copper binding protein, plastocyanin/azurin family.
 
 
   0.652
AKB63394.1
Radical SAM domain protein.
 
  
 0.502
AKB64656.1
ABC transporter, permease protein.
 
  
 0.449
AKB64476.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.447
AKB65883.1
ABC transporter, permease protein.
 
  
 0.444
AKB65442.1
ABC transporter, permease protein.
 
  
 0.436
AKB63546.1
ABC transporter, permease protein.
 
  
 0.417
AKB63481.1
Radical SAM domain protein.
 
  
 0.413
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.