AKB65813.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65813.1

Iron(III) dicitrate-binding protein. (404 aa)

Predicted Functional Partners:

AKB65814.1

0.999

AKB65815.1

0.999

AKB64676.1

0.761

AKB64999.1

0.721

AKB66261.1

0.678

AKB66268.1

0.531

AKB65330.1

0.481

AKB65235.1

0.478

AKB65588.1

0.476

AKB66525.1

0.470

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB64676.1	AKB65813.1	MSMAS_1480	MSMAS_2617	Transcriptional regulator, ArsR family.	Iron(III) dicitrate-binding protein.	0.761
AKB64676.1	AKB65814.1	MSMAS_1480	MSMAS_2618	Transcriptional regulator, ArsR family.	Iron(III) dicitrate transport system permease protein.	0.636
AKB64676.1	AKB65815.1	MSMAS_1480	MSMAS_2619	Transcriptional regulator, ArsR family.	Iron(III) dicitrate transport ATP-binding protein.	0.685
AKB64999.1	AKB65813.1	MSMAS_1803	MSMAS_2617	N-methylhydantoinase A/acetone carboxylase, beta subunit.	Iron(III) dicitrate-binding protein.	0.721
AKB65235.1	AKB65813.1	MSMAS_2039	MSMAS_2617	ABC transporter, permease protein.	Iron(III) dicitrate-binding protein.	0.478
AKB65330.1	AKB65813.1	MSMAS_2134	MSMAS_2617	O-methyltransferase.	Iron(III) dicitrate-binding protein.	0.481
AKB65588.1	AKB65813.1	MSMAS_2392	MSMAS_2617	Putative cobalt transporter in sulfate-reducing delta-proteobacteria.	Iron(III) dicitrate-binding protein.	0.476
AKB65813.1	AKB64676.1	MSMAS_2617	MSMAS_1480	Iron(III) dicitrate-binding protein.	Transcriptional regulator, ArsR family.	0.761
AKB65813.1	AKB64999.1	MSMAS_2617	MSMAS_1803	Iron(III) dicitrate-binding protein.	N-methylhydantoinase A/acetone carboxylase, beta subunit.	0.721
AKB65813.1	AKB65235.1	MSMAS_2617	MSMAS_2039	Iron(III) dicitrate-binding protein.	ABC transporter, permease protein.	0.478
AKB65813.1	AKB65330.1	MSMAS_2617	MSMAS_2134	Iron(III) dicitrate-binding protein.	O-methyltransferase.	0.481
AKB65813.1	AKB65588.1	MSMAS_2617	MSMAS_2392	Iron(III) dicitrate-binding protein.	Putative cobalt transporter in sulfate-reducing delta-proteobacteria.	0.476
AKB65813.1	AKB65814.1	MSMAS_2617	MSMAS_2618	Iron(III) dicitrate-binding protein.	Iron(III) dicitrate transport system permease protein.	0.999
AKB65813.1	AKB65815.1	MSMAS_2617	MSMAS_2619	Iron(III) dicitrate-binding protein.	Iron(III) dicitrate transport ATP-binding protein.	0.999
AKB65813.1	AKB66261.1	MSMAS_2617	MSMAS_3065	Iron(III) dicitrate-binding protein.	Hypothetical protein.	0.678
AKB65813.1	AKB66268.1	MSMAS_2617	MSMAS_3072	Iron(III) dicitrate-binding protein.	Putative transporter PduT for various metalloporphyrins.	0.531
AKB65813.1	AKB66525.1	MSMAS_2617	MSMAS_3329	Iron(III) dicitrate-binding protein.	Zinc ABC transporter, periplasmic-binding protein ZnuA.	0.470
AKB65814.1	AKB64676.1	MSMAS_2618	MSMAS_1480	Iron(III) dicitrate transport system permease protein.	Transcriptional regulator, ArsR family.	0.636
AKB65814.1	AKB65813.1	MSMAS_2618	MSMAS_2617	Iron(III) dicitrate transport system permease protein.	Iron(III) dicitrate-binding protein.	0.999
AKB65814.1	AKB65815.1	MSMAS_2618	MSMAS_2619	Iron(III) dicitrate transport system permease protein.	Iron(III) dicitrate transport ATP-binding protein.	0.999