AKB65832.1 protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AKB65832.1

Trimethylamine:corrinoid methyltransferase; Pyrrolysine-containing; Belongs to the trimethylamine methyltransferase family. (495 aa)

Predicted Functional Partners:

AKB65833.1

0.997

AKB63440.1

0.991

AKB66179.1

0.990

AKB66421.1

0.979

AKB66422.1

0.965

AKB63424.1

0.940

AKB64323.1

0.939

AKB66181.1

0.937

AKB64943.1

0.935

AKB65830.1

0.935

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKB63424.1	AKB63440.1	MSMAS_0228	MSMAS_0244	Methanol methyltransferase corrinoid protein.	Corrinoid methyltransferase protein.	0.735
AKB63424.1	AKB64323.1	MSMAS_0228	MSMAS_1127	Methanol methyltransferase corrinoid protein.	Methanol methyltransferase corrinoid protein.	0.901
AKB63424.1	AKB64943.1	MSMAS_0228	MSMAS_1747	Methanol methyltransferase corrinoid protein.	Dimethylamine methyltransferase corrinoid protein.	0.693
AKB63424.1	AKB65830.1	MSMAS_0228	MSMAS_2634	Methanol methyltransferase corrinoid protein.	Dimethylamine methyltransferase corrinoid protein.	0.691
AKB63424.1	AKB65832.1	MSMAS_0228	MSMAS_2636	Methanol methyltransferase corrinoid protein.	Trimethylamine:corrinoid methyltransferase; Pyrrolysine-containing; Belongs to the trimethylamine methyltransferase family.	0.940
AKB63424.1	AKB65833.1	MSMAS_0228	MSMAS_2637	Methanol methyltransferase corrinoid protein.	Trimethylamine methyltransferase corrinoid protein.	0.686
AKB63424.1	AKB66179.1	MSMAS_0228	MSMAS_2983	Methanol methyltransferase corrinoid protein.	Trimethylamine methyltransferase corrinoid protein.	0.685
AKB63424.1	AKB66181.1	MSMAS_0228	MSMAS_2985	Methanol methyltransferase corrinoid protein.	Dimethylamine methyltransferase corrinoid protein.	0.689
AKB63424.1	AKB66421.1	MSMAS_0228	MSMAS_3225	Methanol methyltransferase corrinoid protein.	Methylcobalamin:coenzyme M methyltransferase, methylamine-specific.	0.795
AKB63424.1	AKB66422.1	MSMAS_0228	MSMAS_3226	Methanol methyltransferase corrinoid protein.	Monomethylamine methyltransferase corrinoid protein.	0.690
AKB63440.1	AKB63424.1	MSMAS_0244	MSMAS_0228	Corrinoid methyltransferase protein.	Methanol methyltransferase corrinoid protein.	0.735
AKB63440.1	AKB64323.1	MSMAS_0244	MSMAS_1127	Corrinoid methyltransferase protein.	Methanol methyltransferase corrinoid protein.	0.891
AKB63440.1	AKB64943.1	MSMAS_0244	MSMAS_1747	Corrinoid methyltransferase protein.	Dimethylamine methyltransferase corrinoid protein.	0.702
AKB63440.1	AKB65830.1	MSMAS_0244	MSMAS_2634	Corrinoid methyltransferase protein.	Dimethylamine methyltransferase corrinoid protein.	0.701
AKB63440.1	AKB65832.1	MSMAS_0244	MSMAS_2636	Corrinoid methyltransferase protein.	Trimethylamine:corrinoid methyltransferase; Pyrrolysine-containing; Belongs to the trimethylamine methyltransferase family.	0.991
AKB63440.1	AKB65833.1	MSMAS_0244	MSMAS_2637	Corrinoid methyltransferase protein.	Trimethylamine methyltransferase corrinoid protein.	0.908
AKB63440.1	AKB66179.1	MSMAS_0244	MSMAS_2983	Corrinoid methyltransferase protein.	Trimethylamine methyltransferase corrinoid protein.	0.908
AKB63440.1	AKB66181.1	MSMAS_0244	MSMAS_2985	Corrinoid methyltransferase protein.	Dimethylamine methyltransferase corrinoid protein.	0.688
AKB63440.1	AKB66421.1	MSMAS_0244	MSMAS_3225	Corrinoid methyltransferase protein.	Methylcobalamin:coenzyme M methyltransferase, methylamine-specific.	0.952
AKB63440.1	AKB66422.1	MSMAS_0244	MSMAS_3226	Corrinoid methyltransferase protein.	Monomethylamine methyltransferase corrinoid protein.	0.735