Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB65834.1Choline permease LicB. (349 aa)    
Predicted Functional Partners:
AKB65832.1
Trimethylamine:corrinoid methyltransferase; Pyrrolysine-containing; Belongs to the trimethylamine methyltransferase family.
 
     0.870
AKB65835.1
Hypothetical protein.
       0.803
pylS
Pyrrolysyl-tRNA synthetase; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
  
   
 0.690
AKB63921.1
Hypothetical protein.
  
     0.676
AKB66418.1
Proline reductase for pyrrolysine biosynthesis.
  
     0.655
AKB63922.1
Hypothetical protein.
  
     0.648
AKB65901.1
Hypothetical protein.
  
     0.646
AKB66417.1
Pyrrolysine synthetase.
 
   
 0.645
AKB66219.1
Methanol:corrinoid methyltransferase.
 
   
 0.644
AKB63423.1
Methanol:corrinoid methyltransferase.
 
   
 0.640
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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