STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65840.1Leucine responsive regulatory protein. (163 aa)    
Predicted Functional Partners:
AKB65839.1
Biosynthetic Aromatic amino acid aminotransferase alpha / Aspartate aminotransferase.
 
   
 0.968
rps8e
SSU ribosomal protein S8e.
       0.898
AKB65480.1
Transcriptional regulator, AsnC family.
   
 
 0.721
AKB65527.1
Biosynthetic Aromatic amino acid aminotransferase alpha / Aspartate aminotransferase.
 
   
 0.492
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
    0.451
trpF-2
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
 
  
 0.426
AKB64254.1
Aspartate aminotransferase.
 
   
 0.425
AKB63197.1
Origin of replication recognition protein / Cell division control protein 6; Involved in regulation of DNA replication.
  
    0.403
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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