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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65876.1PQQ enzyme repeat domain protein. (474 aa)    
Predicted Functional Partners:
AKB64762.1
Hypothetical protein.
 
 0.926
AKB64479.1
Putative ankyrin repeat protein.
 
 0.905
AKB65144.1
Putative phosphoglycerate mutase.
 
 0.892
AKB64806.1
Universal archaeal KH-domain/beta-lactamase-domain protein.
  
 
 0.883
AKB64071.1
Putative exonuclease, DNA ligase-associated.
  
 
 0.882
AKB66208.1
2',3'-cyclic nucleotide 3'-phosphodiesterase.
 
 0.879
AKB65380.1
GTPase YlqF.
 
 0.869
AKB64265.1
Gly-tRNA(Ala) deacylase.
  
 0.867
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 0.867
AKB64458.1
Deacetylase.
   
 0.855
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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