Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65877.1PQQ enzyme repeat domain protein. (572 aa)    
Predicted Functional Partners:
AKB65878.1
CobN component of cobalt chelatase involved in B12 biosynthesis.
 
     0.825
AKB65876.1
PQQ enzyme repeat domain protein.
 
    
0.802
AKB65879.1
Hypothetical protein.
       0.756
AKB65881.1
Transmembrane component of general energizing module of ECF transporters.
 
     0.755
AKB65225.1
Hypothetical protein.
  
     0.704
AKB65880.1
ATPase component of general energizing module of ECF transporters.
 
     0.687
AKB66237.1
Hypothetical protein.
  
     0.687
AKB64637.1
Hypothetical protein.
  
     0.684
AKB66220.1
Hypothetical protein.
  
     0.683
AKB63354.1
Hypothetical protein.
  
     0.680
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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