Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKB65883.1ABC transporter, permease protein. (241 aa)    
Predicted Functional Partners:
AKB65882.1
ABC transporter, ATP-binding protein.
 
 
 0.964
AKB64744.1
ABC transporter, ATP-binding protein.
 
 
 0.897
AKB63545.1
ABC transporter, ATP-binding protein.
 
 
 0.865
AKB64657.1
ABC transporter, ATP-binding protein.
 
 
 0.862
AKB65441.1
ABC transporter, ATP-binding protein.
 
 
 0.859
AKB65881.1
Transmembrane component of general energizing module of ECF transporters.
 
     0.820
AKB65880.1
ATPase component of general energizing module of ECF transporters.
    
  0.697
AKB65497.1
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA.
 
 
 0.642
AKB65058.1
ABC transporter, ATP-binding protein.
 
 
 0.633
AKB65450.1
ABC transporter, ATP-binding protein.
 
 
 0.608
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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