STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65901.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
AKB63426.1
Ferredoxin.
 
     0.727
AKB63561.1
Ferredoxin.
 
     0.722
AKB66420.1
Ferredoxin.
 
     0.721
AKB63922.1
Hypothetical protein.
  
     0.676
pylS
Pyrrolysyl-tRNA synthetase; Catalyzes the attachment of pyrrolysine to tRNA(Pyl). Pyrrolysine is a lysine derivative encoded by the termination codon UAG.
  
     0.663
AKB66418.1
Proline reductase for pyrrolysine biosynthesis.
  
     0.661
AKB66178.1
Choline permease LicB.
  
     0.655
AKB65834.1
Choline permease LicB.
  
     0.646
AKB66417.1
Pyrrolysine synthetase.
  
     0.641
AKB63423.1
Methanol:corrinoid methyltransferase.
 
     0.640
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.