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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65922.1NADH dehydrogenase. (141 aa)    
Predicted Functional Partners:
AKB65921.1
Hypothetical protein.
 
  
 0.946
AKB63214.1
Hypothetical protein.
     0.932
AKB65923.1
Homocysteine desulfhydrase.
 
     0.552
AKB65976.1
Hypothetical protein.
 
  
 0.543
AKB64146.1
Hypothetical protein.
 
  
 0.531
AKB65920.1
Purine nucleoside phosphoramidase.
       0.471
AKB64977.1
Metallo-beta-lactamase family protein.
 
  
 0.438
AKB65924.1
Scaffold protein.
       0.421
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.