STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB65935.1Digeranylgeranylglyceryl phosphate synthase. (297 aa)    
Predicted Functional Partners:
AKB64217.1
Membrane alanine aminopeptidase N.
  
     0.709
fni
Isopentenyl-diphosphate delta-isomerase, FMN-dependent; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
     
  0.707
AKB66292.1
Hypothetical protein.
  
     0.567
AKB65259.1
Hypothetical protein.
  
     0.560
AKB65273.1
Cell surface protein.
  
     0.540
AKB65936.1
Glutamate transport ATP-binding protein.
       0.539
AKB65937.1
Glutamate transport membrane-spanning protein.
       0.539
AKB63374.1
Hypothetical protein.
  
     0.516
AKB65776.1
Hypothetical protein.
  
     0.514
AKB64987.1
Cell surface protein.
  
     0.498
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.