Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKB65963.1Putative ski2-type helicase. (964 aa)    
Predicted Functional Partners:
AKB65966.1
Phosphoesterase.
 
    0.888
AKB63629.1
Hypothetical protein.
  
     0.589
AKB66123.1
Glycerol dehydrogenase.
 
     0.551
AKB66451.1
tRNA-guanine(15) transglycosylase.
 
     0.538
AKB65517.1
Conserved transmembrane protein.
  
     0.531
AKB66480.1
Origin of replication recognition protein / Cell division control protein 6; Involved in regulation of DNA replication.
 
 
   0.531
AKB65844.1
Endoribonuclease Nob1.
  
     0.530
cmk
Cytidylate kinase.
 
     0.528
AKB63219.1
Archaeosine tRNA-ribosyltransferase type 2.
 
     0.524
radB
DNA repair and recombination protein RadB; Involved in DNA repair and in homologous recombination. May regulate the cleavage reactions of the branch-structured DNA. Has a very weak ATPase activity that is not stimulated by DNA. Binds DNA but does not promote DNA strands exchange.
  
 
 0.508
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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