STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66048.1Biotin operon repressor; Biotin-protein ligase. (325 aa)    
Predicted Functional Partners:
AKB66049.1
Pyruvate carboxyl transferase subunit A.
 0.991
AKB66047.1
Hypothetical protein.
       0.948
AKB63459.1
Substrate-specific component BioY of biotin ECF transporter.
 
   
 0.878
AKB66050.1
Pyruvate carboxyl transferase subunit B.
 
     0.870
AKB65607.1
Phosphopantothenoylcysteine synthetase.
  
 
 0.707
AKB65409.1
NADH-quinone oxidoreductase subunit C/D.
  
    0.686
AKB65410.1
NADH-quinone oxidoreductase subunit C/D.
  
    0.686
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
     
 0.675
AKB64554.1
Proton/glutamate symport protein / Sodium/glutamate symport protein.
 
   
 0.634
AKB66416.1
Proline 2-methylase for pyrrolysine biosynthesis.
  
  
 0.620
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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