STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66079.1Valine--pyruvate aminotransferase. (394 aa)    
Predicted Functional Partners:
mfnB
Duf556 family protein; Catalyzes the formation of 4-(hydroxymethyl)-2- furancarboxaldehyde phosphate (4-HFC-P) from two molecules of glyceraldehyde-3-P (GA-3-P).
    
 0.955
AKB65387.1
Delta 1-pyrroline-5-carboxylate synthetase.
    
 0.953
AKB64395.1
Cysteate synthase; Specifically catalyzes the beta-elimination of phosphate from L-phosphoserine and the beta-addition of sulfite to the dehydroalanine intermediate to produce L-cysteate.
  
 0.882
AKB64394.1
Sulfopyruvate decarboxylase - beta subunit.
    
 0.783
AKB64128.1
Prephenate dehydratase.
 
 
 0.701
AKB66442.1
Aspartokinase; Belongs to the aspartokinase family.
  
 
 0.684
AKB63237.1
Prephenate and/or arogenate dehydrogenase (unknown specificity).
    
 0.623
AKB65190.1
Homoserine dehydrogenase.
 
 0.612
AKB64701.1
Ornithine decarboxylase.
 
 
 0.604
AKB65912.1
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.557
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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