rpl18e protein (Methanosarcina mazei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rpl18e

LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family. (126 aa)

Predicted Functional Partners:

rpl40e

0.999

rpl2

0.999

rps9

0.999

rpl13

0.999

rpl31e

0.998

rpl21e

0.998

rpl15e

0.997

rpl7ae

0.997

rpl24e

0.997

rps6e

0.997

Your Current Organism:

Methanosarcina mazei

NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl13	rpl15e	MSMAS_2922	MSMAS_2092	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	0.991
rpl13	rpl18e	MSMAS_2922	MSMAS_2923	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.999
rpl13	rpl2	MSMAS_2922	MSMAS_2557	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.999
rpl13	rpl21e	MSMAS_2922	MSMAS_2168	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.996
rpl13	rpl24e	MSMAS_2922	MSMAS_2236	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L24e; Binds to the 23S rRNA.	0.996
rpl13	rpl31e	MSMAS_2922	MSMAS_0499	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.995
rpl13	rpl40e	MSMAS_2922	MSMAS_0362	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.997
rpl13	rpl7ae	MSMAS_2922	MSMAS_2234	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.994
rpl13	rps6e	MSMAS_2922	MSMAS_2239	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.991
rpl13	rps9	MSMAS_2922	MSMAS_2921	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	SSU ribosomal protein S16e (S9p); Belongs to the universal ribosomal protein uS9 family.	0.999
rpl15e	rpl13	MSMAS_2092	MSMAS_2922	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L13Ae (L13p); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.991
rpl15e	rpl18e	MSMAS_2092	MSMAS_2923	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.	0.997
rpl15e	rpl2	MSMAS_2092	MSMAS_2557	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L8e (L2p); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.999
rpl15e	rpl21e	MSMAS_2092	MSMAS_2168	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.	0.998
rpl15e	rpl24e	MSMAS_2092	MSMAS_2236	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L24e; Binds to the 23S rRNA.	0.998
rpl15e	rpl31e	MSMAS_2092	MSMAS_0499	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L31e; Belongs to the ribosomal protein L31e family.	0.998
rpl15e	rpl40e	MSMAS_2092	MSMAS_0362	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.	0.998
rpl15e	rpl7ae	MSMAS_2092	MSMAS_2234	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	LSU ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.	0.998
rpl15e	rps6e	MSMAS_2092	MSMAS_2239	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.	0.996
rpl15e	rps9	MSMAS_2092	MSMAS_2921	LSU ribosomal protein L15e; Belongs to the eukaryotic ribosomal protein eL15 family.	SSU ribosomal protein S16e (S9p); Belongs to the universal ribosomal protein uS9 family.	0.993