STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66123.1Glycerol dehydrogenase. (289 aa)    
Predicted Functional Partners:
AKB66124.1
Replication factor-A protein 1.
 
  
 0.957
AKB64203.1
Replication protein A (two OB fold, one zinc finger).
 
  
 0.814
AKB63393.1
Phosphoserine phosphatase.
 
     0.750
AKB64055.1
HTH DNA-binding protein.
  
     0.726
priS
DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
  
   
 0.719
AKB63219.1
Archaeosine tRNA-ribosyltransferase type 2.
  
     0.711
AKB66127.1
Hypothetical protein.
  
     0.711
AKB65913.1
Hypothetical protein.
  
     0.708
AKB65728.1
Hypothetical protein.
  
     0.700
AKB66069.1
Hypothetical protein.
  
   
 0.700
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.