STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66138.1Radical SAM domain heme biosynthesis protein. (349 aa)    
Predicted Functional Partners:
AKB64187.1
Radical SAM domain protein.
 
  
0.978
AKB66137.1
Heme biosynthesis protein related to NirD and NirG.
 
 0.914
AKB66145.1
Radical SAM domain heme biosynthesis protein.
  
  
 
0.900
AKB66136.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.898
hemL
Glutamate-1-semialdehyde aminotransferase.
 
  
 0.654
AKB66144.1
Heme biosynthesis protein related to NirD and NirG.
 
 0.647
AKB66143.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.591
AKB66135.1
Siroheme synthase; Precorrin-2 oxidase; Sirohydrochlorin ferrochelatase.
 
   
 0.538
AKB65131.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobB.
 
 
 0.485
AKB63671.1
Molybdopterin converting factor small subunit.
 
  
 0.472
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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