STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKB66138.1Radical SAM domain heme biosynthesis protein. (349 aa)    
Predicted Functional Partners:
AKB64187.1
Radical SAM domain protein.
 
  
0.961
AKB66137.1
Heme biosynthesis protein related to NirD and NirG.
 
 0.916
AKB66145.1
Radical SAM domain heme biosynthesis protein.
  
  
 
0.900
AKB66136.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.892
AKB66144.1
Heme biosynthesis protein related to NirD and NirG.
 
 0.651
AKB66143.1
Heme biosynthesis protein related to NirL and NirH.
 
 
 0.565
AKB66135.1
Siroheme synthase; Precorrin-2 oxidase; Sirohydrochlorin ferrochelatase.
 
   
 0.534
AKB65131.1
Molybdopterin-guanine dinucleotide biosynthesis protein MobB.
 
 
 0.497
AKB66385.1
Molybdenum cofactor biosynthesis protein MoaB.
 
  
 0.471
AKB63671.1
Molybdopterin converting factor small subunit.
 
  
 0.463
Your Current Organism:
Methanosarcina mazei
NCBI taxonomy Id: 213585
Other names: M. mazei S-6, Methanosarcina mazei S-6
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